nf-core/deeptools/bigwigcompare @ 0.0.0-3fc6d40
Summary
Compare two bigWig files based on the number of mapped reads
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPTOOLS_BIGWIGCOMPARE } from 'nf-core/deeptools/bigwigcompare'
License
MIT License
Process
Name
|
DEEPTOOLS_BIGWIGCOMPARE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
bigwig1
file
|
First bigWig file (usually treatment) *.{bw,bigwig,bigWig}
|
bigwig2
file
|
Second bigWig file (usually control) *.{bw,bigwig,bigWig}
|
#2
tuple
meta2
map
|
Groovy Map containing blacklist metadata e.g. [ id:'blacklist' ] |
|---|---|
blacklist
file
|
BED/GTF file containing regions to exclude from analysis *.{bed,gtf}
|
Output
2 channels
#1
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.{bigWig,bedgraph}
file
|
Output bigWig or bedGraph file with comparison results *.{bigWig,bedgraph}
|
#2
versions_deeptools
tuple
${task.process}
string
|
The name of the process |
|---|---|
deeptools
string
|
The name of the tool |
bigwigCompare --version | sed "s/bigwigCompare //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deeptools | A set of user-friendly tools for normalization and visualization of deep-sequencing data | https://deeptools.readthedocs.io/en/develop/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:10:03 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fbigwigcompare/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/deeptools/bigwigcompare/blobs/sha256:eaa344be39826f11abc7f0b28e2c834dfae0a89489aed1e605124ce962554bbb |
| Size | 3.0 KB |
| Checksum | sha256:eaa344be39826f11abc7f0b28e2c834dfae0a89489aed1e605124ce962554bbb |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:13:50 (UTC) | 3 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:03 (UTC) | 4 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:56:58 (UTC) | 4 | 2.9 KB |