Nextflow Modules
Showing module(s) with keyword "bigwig"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bedgraph_bedclip_bedgraphtobigwig | Workflow | bedgraph bigwig clip conversion | Convert bedgraph to bigwig with clip |
| nf-core/deeptools/bamcompare | Process | bam bigwig bedgraph normalization comparison | Compares two BAM files based on the number of mapped reads and generates a bigWig or bedGraph file with the log2 ratio, ratio, difference or other operations. |
| nf-core/deeptools/bigwigcompare | Process | bigwig compare genomics deeptools coverage | Compare two bigWig files based on the number of mapped reads |
| nf-core/deeptools/multibigwigsummary | Process | bigwig deeptools plot heatmap matrix | Computes the average scores for each of the files in every genomic region |
| nf-core/deeptools/plotpca | Process | PCA matrix bam bigwig | Generates principal component analysis (PCA) plot using a compressed matrix generated by multibamsummary or multibigwigsummary as input. |
| nf-core/ucsc/bedgraphtobigwig | Process | bedgraph bigwig ucsc bedgraphtobigwig converter | Convert a bedGraph file to bigWig format. |
| nf-core/ucsc/bigwigaverageoverbed | Process | bigwig bedGraph ucsc | compute average score of bigwig over bed file |
| nf-core/ucsc/wigtobigwig | Process | wig bigwig ucsc | Convert ascii format wig file to binary big wig format |