nf-core/deeptools/computematrix @ 0.0.0-6c4ed3a
Summary
calculates scores per genome regions for other deeptools plotting utilities
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPTOOLS_COMPUTEMATRIX } from 'nf-core/deeptools/computematrix'
License
MIT License
Process
Name
|
DEEPTOOLS_COMPUTEMATRIX |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
bigwig
file
|
bigwig file containing genomic scores *.{bw,bigwig}
|
bed
file
|
bed file containing genomic regions *.{bed}
|
|---|
Output
3 channels
#1
table
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mat.tab
file
|
tabular file containing the scores of the generated matrix *.{computeMatrix.vals.mat.tab}
|
#2
matrix
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mat.gz
file
|
gzipped matrix file needed by the plotHeatmap and plotProfile deeptools utilities *.{computeMatrix.mat.gz}
|
#3
versions_deeptools
tuple
${task.process}
string
|
The name of the process |
|---|---|
deeptools
string
|
The name of the tool |
computeMatrix --version | sed "s/computeMatrix //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deeptools | A set of user-friendly tools for normalization and visualization of deep-sequencing data | n/a |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:13:52 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fcomputematrix/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/deeptools/computematrix/blobs/sha256:88af92b9bdfe46a43cb797df25025fa7e9fc9c0fbe3de9f960127981c19fd4a6 |
| Size | 2.7 KB |
| Checksum | sha256:88af92b9bdfe46a43cb797df25025fa7e9fc9c0fbe3de9f960127981c19fd4a6 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:13:52 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:04 (UTC) | 4 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:56:59 (UTC) | 3 | 2.7 KB |