Nextflow Modules
Showing module(s) with keyword "regions"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bio2zarr/vcfpartition | vcf bcf partition regions parallel genomics | Outputs a set of region strings that partition indexed VCF/BCF files for parallel processing. |
| nf-core/deeptools/computematrix | genome regions scores matrix | calculates scores per genome regions for other deeptools plotting utilities |
| nf-core/ngsbits/bedannotategc | gc bed regions | Annotates GC content fraction to regions in a BED file. |
| nf-core/ngsbits/bedcoverage | bed coverage regions | Annotates a BED file with the average coverage of the regions from one or several BAM/CRAM file(s). |
| nf-core/picard/scatterintervalsbyns | interval_list scatter regions | Writes an interval list created by splitting a reference at Ns.A Program for breaking up a reference into intervals of alternating regions of N and ACGT bases |
| nf-core/samtools/bedcov | bedcov samtools coverage bed bam cram sam regions | reports coverage over regions in a supplied BED file |