Nextflow Registry | nf-core/diamond/deepclust@0.0.0-f484e07

nf-core/diamond/deepclust @ 0.0.0-f484e07

Fast graph-based protein sequence clustering using DIAMOND deepclust

clustering protein diamond deepclust proteomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 11

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Fast graph-based protein sequence clustering using DIAMOND deepclust

Add the following snippet to your workflow script to include this module.

include { DIAMOND_DEEPCLUST } from 'nf-core/diamond/deepclust'

MIT License

Process

`Name`	`DIAMOND_DEEPCLUST`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	Input protein FASTA file to be clustered `*.{fa,faa,fasta,fa.gz,faa.gz,fasta.gz}`

`save_aln` boolean	Whether to save clustering alignments to a file (--aln-out) WARNING: unusable in this version (2.1.24) of diamond due to bug, leaving as placeholder

Output 3 channels

#1 clusters tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}.tsv` file	Tab-separated file mapping each member sequence to its cluster representative. The first column contains the representative accession and the second column contains the member sequence accession. `*.tsv`

#2 alignment tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}.aln` file	Optional. Tab-separated file containing the clustering alignments, produced when save_aln is true (--aln-out). `*.aln`

#3 versions_diamond tuple

`${task.process}` string	The name of the process
`diamond` string	The name of the tool
`diamond --version \| sed 's/.* //g'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
diamond	Accelerated BLAST compatible local sequence aligner	https://github.com/bbuchfink/diamond

Version	0.0.0-f484e07
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	18 Apr 2026 15:00:09 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fdiamond%2Fdeepclust/0.0.0-f484e07/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/diamond/deepclust/blobs/sha256:2a6826b4db67251ceba1972d3c07c55239c942657dce01101db33f8bc791ffbf
Size	2.6 KB
Checksum	sha256:2a6826b4db67251ceba1972d3c07c55239c942657dce01101db33f8bc791ffbf
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:14:09 (UTC)	2	2.7 KB
0.0.0-3fc6d40	22 Apr 2026 15:10:20 (UTC)	3	2.7 KB
0.0.0-f484e07	18 Apr 2026 15:00:09 (UTC)	3	2.6 KB
0.0.0-7f68141	16 Apr 2026 15:00:57 (UTC)	3	2.7 KB