×

Nextflow Modules

Clear

Showing module(s) with keyword "clustering"

Module Keywords Description
nf-core/ampcombi2/cluster antimicrobial peptides amps parsing reporting align clustering mmseqs2 A submodule that clusters the merged AMP hits generated from ampcombi2/parsetables and ampcombi2/complete using MMseqs2 cluster.
nf-core/autocycler/cluster autocycler genome-assembly clustering long-read Cluster replicons in compressed assemblies with Autocycler.
nf-core/comebin/runcomebin metagenomics binning clustering Effective binning of metagenomic contigs using COntrastive Multi-viEw representation learning
nf-core/diamond/cluster clustering alignment genomics proteomics calculate clusters of highly similar sequences
nf-core/diamond/deepclust clustering protein diamond deepclust proteomics Fast graph-based protein sequence clustering using DIAMOND deepclust
nf-core/diamond/linclust clustering protein diamond linclust proteomics Fast protein sequence clustering using a greedy incremental approach
nf-core/humid umi fastq deduplication hamming-distance clustering HUMID is a tool to quickly and easily remove duplicate reads from FastQ files, with or without UMIs.
nf-core/lsa/cosine similarity cosine clustering rnaseq heatmap Calculates the cosine similarity matrix between samples based on a gene expression matrix.
nf-core/mmseqs/cluster protein sequence databases clustering searching indexing mmseqs2 Cluster sequences using MMSeqs2 cluster.
nf-core/mmseqs/createdb protein sequence databases clustering searching indexing mmseqs2 Create an MMseqs database from an existing FASTA/Q file
nf-core/mmseqs/createindex protein sequence databases clustering searching indexing Creates sequence index for mmseqs database
nf-core/mmseqs/createtaxdb protein sequence databases clustering searching taxonomy Adds taxonomy information to an existing MMseqs2 database
nf-core/mmseqs/createtsv protein sequence databases clustering searching indexing mmseqs2 tsv Create a tsv file from a query and a target database as well as the result database
nf-core/mmseqs/databases database indexing clustering searching Download an mmseqs-formatted database
nf-core/mmseqs/easycluster protein sequence databases clustering searching mmseqs2 Cluster sequences using MMSeqs2 easy cluster.
nf-core/mmseqs/linclust protein sequence databases clustering searching indexing mmseqs2 Cluster sequences in linear time using MMSeqs2 linclust.
nf-core/mmseqs/makepaddedseqdb protein sequence databases clustering searching indexing mmseqs2 Create an MMseqs padded database from an existing MMseqs database
nf-core/mmseqs/search protein sequence databases clustering searching