nf-core/diamond/linclust @ 0.0.0-6c4ed3a
Summary
Fast protein sequence clustering using a greedy incremental approach
Get started
Add the following snippet to your workflow script to include this module.
include { DIAMOND_LINCLUST } from 'nf-core/diamond/linclust'
License
MIT License
Process
Name
|
DIAMOND_LINCLUST |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Input protein FASTA file to be clustered *.{fa,faa,fasta,fa.gz,faa.gz,fasta.gz}
|
Output
2 channels
#1
clusters
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.tsv
file
|
Tab-separated file mapping each member sequence to its cluster representative. The first column contains the representative accession and the second column contains the member sequence accession. *.tsv
|
#2
versions_diamond
tuple
${task.process}
string
|
The name of the process |
|---|---|
diamond
string
|
The name of the tool |
diamond --version | sed 's/diamond version //g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| diamond | Accelerated BLAST compatible local sequence aligner | https://github.com/bbuchfink/diamond |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:14:11 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdiamond%2Flinclust/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/diamond/linclust/blobs/sha256:6f1568f589a240cd176f2168b8211ae405052e1ef70c8da76dfb61f7a9f334a8 |
| Size | 2.4 KB |
| Checksum | sha256:6f1568f589a240cd176f2168b8211ae405052e1ef70c8da76dfb61f7a9f334a8 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:11 (UTC) | 2 | 2.4 KB |