nf-core/dshbio/exportsegments @ 0.0.0-0c7146d
Summary
Export assembly segment sequences in GFA 1.0 format to FASTA format
Get started
Add the following snippet to your workflow script to include this module.
include { DSHBIO_EXPORTSEGMENTS } from 'nf-core/dshbio/exportsegments'
License
MIT License
Process
Name
|
DSHBIO_EXPORTSEGMENTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gfa
file
|
Assembly segments in uncompressed or compressed GFA 1.0 format *.{gfa|gfa.bgz|gfa.gz|gfa.zst}
|
Output
2 channels
#1
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fa.gz
file
|
Assembly segment sequences in gzipped FASTA format *.{fa.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| dshbio | Reads, features, variants, assemblies, alignments, genomic range trees, pangenome graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3 or later. | https://github.com/heuermh/dishevelled-bio |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:57:51 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdshbio%2Fexportsegments/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/dshbio/exportsegments/blobs/sha256:92d9affed4cf1a14e939a36e348e75f9a109dc19c068c6f6f483ac857f7487b0 |
| Size | 2.3 KB |
| Checksum | sha256:92d9affed4cf1a14e939a36e348e75f9a109dc19c068c6f6f483ac857f7487b0 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:23 (UTC) | 2 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:28 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:57:51 (UTC) | 2 | 2.3 KB |