nf-core/ectyper @ 0.0.0-0c7146d
Summary
In silico prediction of E. coli serotype
Get started
Add the following snippet to your workflow script to include this module.
include { ECTYPER } from 'nf-core/ectyper'
License
MIT License
Process
Name
|
ECTYPER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA formatted assembly file *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
|
Output
4 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
ectyper log output *.log
|
#2
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
ectyper serotyping results in TSV format *.tsv
|
#3
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Allele report generated from BLAST results *.tst
|
#4
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| ectyper | ECtyper is a python program for serotyping E. coli genomes | https://github.com/phac-nml/ecoli_serotyping |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:58:10 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fectyper/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ectyper/blobs/sha256:cd4ccdaa4989b48db63205f4fc601a08c74c62d1320b1d5f6dd2f7b6422bc78b |
| Size | 2.4 KB |
| Checksum | sha256:cd4ccdaa4989b48db63205f4fc601a08c74c62d1320b1d5f6dd2f7b6422bc78b |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:36 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:38 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:10 (UTC) | 4 | 2.4 KB |