Nextflow Modules
Showing module(s) with keyword "serotype"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/ectyper | Process | escherichia coli fasta serotype | In silico prediction of E. coli serotype |
| nf-core/hicap | Process | fasta serotype Haemophilus influenzae | Identify cap locus serotype and structure in your Haemophilus influenzae assemblies |
| nf-core/meningotype | Process | fasta Neisseria meningitidis serotype | Serotyping of Neisseria meningitidis assemblies |
| nf-core/ngmaster | Process | fasta Neisseria gonorrhoeae serotype | Serotyping Neisseria gonorrhoeae assemblies |
| nf-core/pneumocat | Process | fastq serotype Streptococcus pneumoniae | Determine Streptococcus pneumoniae serotype from Illumina paired-end reads |
| nf-core/seroba/run | Process | fastq serotype Streptococcus pneumoniae | Determine Streptococcus pneumoniae serotype from Illumina paired-end reads |
| nf-core/shigatyper | Process | fastq shigella serotype | Determine Shigella serotype from Illumina or Oxford Nanopore reads |
| nf-core/shigeifinder | Process | fastq fasta shigella serotype | Determine Shigella serotype from assemblies or Illumina paired-end reads |
| nf-core/stecfinder | Process | serotype Escherichia coli fastq fasta | Serotype STEC samples from paired-end reads or assemblies |
| nf-core/tbprofiler/profile | Process | Mycobacterium tuberculosis resistance serotype | A tool to detect resistance and lineages of M. tuberculosis genomes |