nf-core/eigenstratdatabasetools/eigenstratsnpcoverage @ 0.0.0-6c4ed3a
Summary
Provide the SNP coverage of each individual in an eigenstrat formatted dataset.
Get started
Add the following snippet to your workflow script to include this module.
include { EIGENSTRATDATABASETOOLS_EIGENSTRATSNPCOVERAGE } from 'nf-core/eigenstratdatabasetools/eigenstratsnpcoverage'
License
MIT License
Process
Name
|
EIGENSTRATDATABASETOOLS_EIGENSTRATSNPCOVERAGE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
geno
file
|
An Eigenstrat formatted genotype file *.{geno}
|
snp
file
|
An Eigenstrat formatted snp file *.{snp}
|
ind
file
|
An Eigenstrat formatted individual file *.{ind}
|
Output
3 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
A TSV table with the number of covered SNPs per individual. *.{tsv}
|
#2
json
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.json
file
|
A json table with the number of covered SNPs per individual. *.{json}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| eigenstratdatabasetools | A set of tools to compare and manipulate the contents of EingenStrat databases, and to calculate SNP coverage statistics in such databases. | n/a |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:14:41 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Feigenstratdatabasetools%2Feigenstratsnpcoverage/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/blobs/sha256:eb49c88c00ca3f664aa4d76a57be124a140aa5cb8d623b139a5e17857ca81f90 |
| Size | 3.0 KB |
| Checksum | sha256:eb49c88c00ca3f664aa4d76a57be124a140aa5cb8d623b139a5e17857ca81f90 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:41 (UTC) | 3 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:41 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:17 (UTC) | 3 | 2.9 KB |