Nextflow Modules
Showing module(s) with keyword "snp"
| Module | Keywords | Description |
|---|---|---|
| nf-core/eigenstratdatabasetools/eigenstratsnpcoverage | coverage eigenstrat eigenstratdatabasetools snp snps | Provide the SNP coverage of each individual in an eigenstrat formatted dataset. |
| nf-core/ngscheckmate/fastq | ngscheckmate matching snp qc | Determining whether sequencing data comes from the same individual by using SNP matching. This module generates vaf files for individual fastq file(s), ready for the vafncm module. |
| nf-core/ngscheckmate/ncm | ngscheckmate matching snp | Determining whether sequencing data comes from the same individual by using SNP matching. Designed for humans on vcf or bam files. |
| nf-core/ngscheckmate/patterngenerator | ngscheckmate matching snp qc | Determining whether sequencing data comes from the same individual by using SNP matching. This module generates PT files from a bed file containing individual positions. |
| nf-core/ngscheckmate/vafncm | ngscheckmate matching snp qc | Determining whether sequencing data comes from the same individual by using SNP matching. This module generates PT files from a bed file containing individual positions. |
| nf-core/slamdunk/all | slamseq rna-seq mapping snp quantification | Complete SLAMseq analysis pipeline including read mapping, filtering, SNP calling, and quantification |
| nf-core/snpdists | snp dist distance matrix | Pairwise SNP distance matrix from a FASTA sequence alignment |