nf-core/emmtyper @ 0.0.0-3fc6d40
Summary
EMM typing of Streptococcus pyogenes assemblies
Get started
Add the following snippet to your workflow script to include this module.
include { EMMTYPER } from 'nf-core/emmtyper'
License
MIT License
Process
Name
|
EMMTYPER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA assembly file *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
Tab-delimited result file *.tsv
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| emmtyper | Streptococcus pyogenes in silico EMM typer | https://github.com/MDU-PHL/emmtyper |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:10:52 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Femmtyper/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/emmtyper/blobs/sha256:d0e1736cc169deb324cb63700a16713f2be40a8431d5e3baa8ef76f8b071e2a8 |
| Size | 2.1 KB |
| Checksum | sha256:d0e1736cc169deb324cb63700a16713f2be40a8431d5e3baa8ef76f8b071e2a8 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:52 (UTC) | 4 | 2.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:52 (UTC) | 4 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:33 (UTC) | 3 | 2.0 KB |