Nextflow Modules
Showing module(s) with keyword "typing"
| Module | Keywords | Description |
|---|---|---|
| nf-core/emmtyper | fasta Streptococcus pyogenes typing | EMM typing of Streptococcus pyogenes assemblies |
| nf-core/mlst | mlst typing bacteria assembly | Run Torsten Seemann's classic MLST on a genome assembly |
| nf-core/seq2hla | hla typing rna-seq genomics immunogenetics | Precision HLA typing and expression from RNA-seq data using seq2HLA |
| nf-core/srst2/srst2 | mlst typing illumina | Short Read Sequence Typing for Bacterial Pathogens is a program designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes. |