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nf-core/expansionhunterdenovo/profile @ 0.0.0-6c4ed3a

Compute genome-wide STR profile

expansionhunterdenovo profile STR genome bam cram
Latest version: 0.0.0-6c4ed3a
Total downloads: 10
Source: nf-core/modules
Authors: @nvnieuwk
Maintainers: @nvnieuwk

Summary

Compute genome-wide STR profile

Get started

Add the following snippet to your workflow script to include this module.

include { EXPANSIONHUNTERDENOVO_PROFILE } from 'nf-core/expansionhunterdenovo/profile'

License

MIT License

Process
Name EXPANSIONHUNTERDENOVO_PROFILE
Input 3 channels
#1 tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
alignment_file file

BAM/CRAM file

 *.{bam,cram}
alignment_index file

Index of the BAM/CRAM file

 *.{bai,crai}
#2 tuple
meta2 map

Groovy Map containing reference information e.g. [ id:'test' ]
fasta file

The FASTA reference file

 *.{fasta,fa}
#3 tuple
meta3 map

Groovy Map containing reference information e.g. [ id:'test' ]
fasta_fai file

The index of the FASTA reference file

 *.fai
Output 4 channels
#1 versions
versions.yml file

File containing software versions

 versions.yml
#2 locus_tsv tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
*.locus.tsv file

The locus TSV file

 *.tsv
#3 motif_tsv tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
*.motif.tsv file

The motif TSV file

 *.tsv
#4 str_profile tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
*.str_profile.json file

The JSON file containing the STR profile

 *.json
Tool Description Homepage
expansionhunterdenovo ExpansionHunter Denovo (EHdn) is a suite of tools for detecting novel expansions of short tandem repeats (STRs). https://github.com/Illumina/ExpansionHunterDenovo
Version 0.0.0-6c4ed3a
Commit ID 6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date 23 Apr 2026 15:15:12 (UTC)
Download URL https://registry.nextflow.io/api/v1/modules/nf-core%2Fexpansionhunterdenovo%2Fprofile/0.0.0-6c4ed3a/download
OCI Store URL https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/expansionhunterdenovo/profile/blobs/sha256:3095f9eb4d21cbd1851d0c4368906f21267c82452285220d59d6ffa5e03c1e61
Size 2.6 KB
Checksum sha256:3095f9eb4d21cbd1851d0c4368906f21267c82452285220d59d6ffa5e03c1e61
Downloads 4
Version Date Status Downloads Size
0.0.0-6c4ed3a 23 Apr 2026 15:15:12 (UTC) 4 2.6 KB
0.0.0-3fc6d40 22 Apr 2026 15:11:05 (UTC) 3 2.6 KB
0.0.0-0c7146d 08 Apr 2026 18:59:01 (UTC) 3 2.6 KB