Nextflow Modules
Showing module(s) with keyword "profile"
| Module | Keywords | Description |
|---|---|---|
| nf-core/deeptools/plotprofile | plot profile scores matrix | plots values produced by deeptools_computematrix as a profile plot |
| nf-core/expansionhunterdenovo/profile | expansionhunterdenovo profile STR genome bam cram | Compute genome-wide STR profile |
| nf-core/hmmer/hmmalign | alignment HMMER profile amino acid nucleotide | hmmalign from the HMMER suite aligns a number of sequences to an HMM profile |
| nf-core/hmmer/hmmstat | hidden markov model HMM hmmer statistics profile summary | display summary statistics for each profile HMM in an HMM database file |
| nf-core/instrain/profile | instrain metagenomics population genomics profile | inStrain is python program for analysis of co-occurring genome populations from metagenomes that allows highly accurate genome comparisons, analysis of coverage, microdiversity, and linkage, and sensitive SNP detection with gene localization and synonymous non-synonymous identification |
| nf-core/melon | profile metagenomics melon classification long reads nanopore | Performs taxonomic profiling of long metagenomic reads against the melon database |
| nf-core/rpbp/extractorfprofiles | rpbp orf psite profile riboseq | Build a per-ORF P-site count vector for every candidate open reading frame (ORF) in the catalogue. For each ORF, walks the spliced exons in 3-nucleotide codon steps and counts the P-site positions (read 5'-end coordinate plus the length-specific offset selected upstream) that fall in each codon. Counts are summed across all read lengths that passed the periodicity filter from `rpbp/getperiodiclengthsoffsets`. The resulting per-ORF vectors are the input to Bayesian translation scoring in `rpbp/estimateorfbayesfactors`: a translated ORF should show P-site density concentrated at codon-start positions, while a non-translated region should look flat or noisy. Emitted as a sparse matrix (one row per ORF, columns indexed by codon position). |
| nf-core/sylph/profile | profile metagenomics sylph classification | Sylph profile command for taxonoming profiling |
| nf-core/sylph/sketchgenomes | profile metagenomics sylph classification genomes sketch | Sylph profile command for taxonoming profiling of genomes |