nf-core/fairy/sketch @ 0.0.0-7f68141
Summary
Sketches FASTQ reads into binary sketch (.bcsp) files for alignment-free coverage estimation.
Get started
Add the following snippet to your workflow script to include this module.
include { FAIRY_SKETCH } from 'nf-core/fairy/sketch'
License
MIT License
Process
Name
|
FAIRY_SKETCH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
|---|---|
reads
file
|
List of input FASTQ files. For paired-end data provide two files [R1, R2]; for single-end or long reads provide a single file [reads]. *.{fastq,fastq.gz,fq,fq.gz}
|
Output
2 channels
#1
sketch
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] |
|---|---|
${prefix}/*.bcsp
file
|
Binary sketch file(s) produced by fairy sketch, used as input for fairy coverage estimation. *.bcsp
|
#2
versions_fairy
tuple
${task.process}
string
|
The name of the process |
|---|---|
fairy
string
|
The name of the tool |
fairy --version 2>&1 | sed 's/fairy //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fairy | Alignment-free tool for rapidly computing coverage of contigs/genomes from short or long reads using sketching. | https://github.com/bluenote-1577/fairy |
| Version | 0.0.0-7f68141 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 16 Apr 2026 15:01:33 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffairy%2Fsketch/0.0.0-7f68141/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fairy/sketch/blobs/sha256:7f9d48ec14912ce7b66cffaa5772e9be25ccb28e52f175917f90bcf806a425f3 |
| Size | 2.5 KB |
| Checksum | sha256:7f9d48ec14912ce7b66cffaa5772e9be25ccb28e52f175917f90bcf806a425f3 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:15:14 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:11:08 (UTC) | 2 | 2.5 KB | |
| 0.0.0-f484e07 | 18 Apr 2026 15:00:21 (UTC) | 3 | 2.5 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:01:33 (UTC) | 3 | 2.5 KB |