nf-core/fastavalidator @ 0.0.0-0c7146d
Summary
"Python C-extension for a simple validator for fasta files. The module emits the validated file or an error log upon validation failure."
Get started
Add the following snippet to your workflow script to include this module.
include { FASTAVALIDATOR } from 'nf-core/fastavalidator'
License
MIT License
Process
Name
|
FASTAVALIDATOR |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing file information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
Input fasta file *.fasta
|
Output
3 channels
#1
error_log
tuple
meta
map
|
Groovy Map containing file information e.g. [ id:'test' ] |
|---|---|
*.error.log
file
|
Log file for failed validation *.error.log
|
#2
success_log
tuple
meta
map
|
Groovy Map containing file information e.g. [ id:'test' ] |
|---|---|
*.success.log
file
|
Log file for successful validation *.success.log
|
#3
versions_py_fasta_validator
tuple
${task.process}
string
|
The name of the process |
|---|---|
py_fasta_validator
string
|
The name of the tool |
py_fasta_validator --version | cut -d" " -f3
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fasta_validate | "Python C-extension for a simple C code to validate a fasta file. It only checks a few things, and by default only sets its response via the return code, so you will need to check that!" | https://github.com/linsalrob/py_fasta_validator |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:59:18 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffastavalidator/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fastavalidator/blobs/sha256:e3e464c7fde9dcdfd7aaf7af3077a5234d7ccf4778bec3c861405b3570f3d03b |
| Size | 2.8 KB |
| Checksum | sha256:e3e464c7fde9dcdfd7aaf7af3077a5234d7ccf4778bec3c861405b3570f3d03b |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:15:26 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:11:19 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:59:18 (UTC) | 3 | 2.8 KB |