Nextflow Modules
Showing module(s) with keyword "validation"
| Module | Keywords | Description |
|---|---|---|
| nf-core/falint | fasta validation genome | A fasta linter/validator |
| nf-core/fastavalidator | fasta validation genome | "Python C-extension for a simple validator for fasta files. The module emits the validated file or an error log upon validation failure." |
| nf-core/gffread | gff conversion validation | Validate, filter, convert and perform various other operations on GFF files |
| nf-core/gt/gff3validator | genome gff3 annotation validation | GenomeTools gt-gff3validator utility to strictly validate a GFF3 file |
| nf-core/happy/happy | happy benchmark haplotype validation | Hap.py is a tool to compare diploid genotypes at haplotype level. Rather than comparing VCF records row by row, hap.py will generate and match alternate sequences in a superlocus. A superlocus is a small region of the genome (sized between 1 and around 1000 bp) that contains one or more variants. |
| nf-core/happy/sompy | happy sompy benchmark haplotype validation somatic variants | Hap.py is a tool to compare diploid genotypes at haplotype level. som.py is a part of hap.py compares somatic variations. |
| nf-core/htsnimtools/vcfcheck | validation check variation | This tools takes a background VCF, such as gnomad, that has full genome (though in some cases, users will instead want whole exome) coverage and uses that as an expectation of variants. |
| nf-core/rtgtools/rocplot | rtgtools rocplot validation vcf | Plot ROC curves from vcfeval ROC data files, either to an image, or an interactive GUI. The interactive GUI isn't possible for nextflow. |
| nf-core/shinyngs/validatefomcomponents | expression features observations validation | validate consistency of feature and sample annotations with matrices and contrasts |