Nextflow Registry | nf-core/fastme@0.0.0-0c7146d

nf-core/fastme @ 0.0.0-0c7146d

Distance-based phylogeny with FastME

phylogenetics newick minimum_evolution distance-based

Latest version: 0.0.0-6c4ed3a

Total downloads: 10

Source: nf-core/modules

Authors: @itrujnara

Maintainers: @itrujnara

Distance-based phylogeny with FastME

Add the following snippet to your workflow script to include this module.

include { FASTME } from 'nf-core/fastme'

MIT License

Process

`Name`	`FASTME`

Input 1 channel

#1 tuple

`meta` map	A Groovy map containing sample information, e.g. [ id: "test" ]
`infile` file	MSA or distance matrix in Phylip format `*`
`initial_tree` file	Initial tree

Output 5 channels

#1 nwk tuple

`meta` map	A Groovy map containing sample information
`*.nwk` file	Final phylogeny in Newick format `*.nwk`

#2 stats tuple

`meta` map	A Groovy map containing sample information
`*_stat.txt` file	A text file with the statistics of the phylogeny `*_stat.txt`

#3 matrix tuple

`meta` map	A Groovy map containing sample information
`*.matrix.phy` file	Optional; the distance matrix in Phylip matrix format; it is generated if the -O option is passed in ext.args, although the provided file name will be overwritten `*.matrix.phy`

#4 versions

`versions.yml` file	File containing software versions `versions.yml`

#5 bootstrap tuple

`meta` map	A Groovy map containing sample information
`*.bootstrap` file	A file containing all bootstrap trees in Newick format; it is generated if the -B option is passed in ext.args (and bootstrap is used), although the provided file name will be overwritten `*.bootstrap`

Tool	Description	Homepage
fastme	A comprehensive, accurate and fast distance-based phylogeny inference program.	http://www.atgc-montpellier.fr/fastme

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 18:59:29 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Ffastme/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fastme/blobs/sha256:26784ea4d39f30591883743eb259259ae2aacea9315776e7caa623dc309cfcfb
Size	3.4 KB
Checksum	sha256:26784ea4d39f30591883743eb259259ae2aacea9315776e7caa623dc309cfcfb
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:15:34 (UTC)	4	3.5 KB
0.0.0-3fc6d40	22 Apr 2026 15:11:23 (UTC)	3	3.5 KB
0.0.0-0c7146d	08 Apr 2026 18:59:29 (UTC)	3	3.4 KB