Nextflow Modules
Showing module(s) with keyword "newick"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/clustalo/guidetree | Process | guide tree msa newick | Renders a guidetree in clustalo |
| nf-core/famsa/guidetree | Process | guide tree msa newick | Renders a guidetree in famsa |
| nf-core/fasta_newick_epang_gappa | Workflow | phylogenetic placement phylogenetics alignment fasta newick | Run phylogenetic placement with a number of query sequences plus a reference alignment and phylogeny. Used in nf-core/phyloplace. |
| nf-core/fastme | Process | phylogenetics newick minimum_evolution distance-based | Distance-based phylogeny with FastME |
| nf-core/fasttree | Process | phylogeny newick alignment | Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments. |
| nf-core/iqtree | Process | phylogeny newick maximum likelihood | Produces a Newick format phylogeny from a multiple sequence alignment using the maximum likelihood algorithm. Capable of bacterial genome size alignments. |
| nf-core/rapidnj | Process | phylogeny newick neighbour-joining | Produces a Newick format phylogeny from a multiple sequence alignment using a Neighbour-Joining algorithm. Capable of bacterial genome size alignments. |
| nf-core/raxmlng | Process | phylogeny newick maximum likelihood | RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. |
| nf-core/raxmlng/search | Process | phylogeny newick maximum likelihood model selection | Maximum-likelihood tree search with RAxML-NG, optionally combined with its integrated automatic model selection (MOOSE) |