nf-core/fastqc @ 0.0.0-3fc6d40
Summary
Run FastQC on sequenced reads
Get started
Add the following snippet to your workflow script to include this module.
include { FASTQC } from 'nf-core/fastqc'
License
MIT License
Process
Name
|
FASTQC |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. |
Output
3 channels
#1
zip
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.zip
file
|
FastQC report archive *_{fastqc.zip}
|
#2
html
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.html
file
|
FastQC report *_{fastqc.html}
|
#3
versions_fastqc
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
fastqc
string
|
The tool name |
fastqc --version | sed "/FastQC v/!d; s/.*v//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fastqc | FastQC gives general quality metrics about your reads. It provides information about the quality score distribution across your reads, the per base sequence content (%A/C/G/T). You get information about adapter contamination and other overrepresented sequences. | https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:11:57 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffastqc/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fastqc/blobs/sha256:22f0326184e5e27e57fd2e2a6054ee8e24814162ee35dd190c7c6815820f3273 |
| Size | 17.9 KB |
| Checksum | sha256:22f0326184e5e27e57fd2e2a6054ee8e24814162ee35dd190c7c6815820f3273 |
| Downloads | 6 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:16:51 (UTC) | 15 | 17.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:11:57 (UTC) | 6 | 17.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:59:35 (UTC) | 8 | 17.9 KB |