Nextflow Modules
Showing module(s) with keyword "adapters"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/adapterremoval | Process | trimming adapters merging fastq | Trim sequencing adapters and collapse overlapping reads |
| nf-core/falco | Process | quality control qc adapters fastq | Run falco on sequenced reads |
| nf-core/fastqc | Process | quality control qc adapters fastq | Run FastQC on sequenced reads |
| nf-core/fastq_removeadapters_merge | Workflow | adapters removal short reads merge trim | Remove adapters and merge reads based on various module choices |
| nf-core/fastq_shortreads_preprocess_qc | Workflow | fastq illumina short reads qc stats preprocessing barcoding adapters merge complexity deduplication host decontamination | Quality check and preprocessing subworkflow of Illumina short reads that can do: quality check of input reads and generate statistics, preprocess and validate reads, barcode removal, remove adapters and merge reads, filter by sequence complexity, deduplicate reads, remove host contamination, concatenate reads and generate statistics for post-processing reads. WARNING: requires at least the process configurations from the nextflow.config to be added to the modules.config in the pipeline in order to work as intended. |
| nf-core/fastq_trim_fastp_fastqc | Workflow | qc quality_control adapters trimming fastq | Read QC, fastp trimming and read qc |
| nf-core/trimgalore | Process | trimming adapters sequencing fastq | A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data |