nf-core/fastqscreen/buildfromindex @ 0.0.0-6c4ed3a
Summary
Build fastq screen config file from bowtie index files
Get started
Add the following snippet to your workflow script to include this module.
include { FASTQSCREEN_BUILDFROMINDEX } from 'nf-core/fastqscreen/buildfromindex'
License
MIT License
Process
Name
|
FASTQSCREEN_BUILDFROMINDEX |
|---|
Input
2 channels
genome_names
string
|
List of names for each index |
|---|
indexes
directory
|
Bowtie2 genome directories containing index files |
|---|
Output
2 channels
#1
database
FastQ_Screen_Genomes
directory
|
fastq screen database folder containing config file and index folders FastQ_Screen_Genomes
|
|---|
#2
versions_fastqscreen
tuple
${task.process}
string
|
The name of the process |
|---|---|
fastqscreen
string
|
The name of the tool |
fastq_screen --version 2>&1 | sed "s/^.*FastQ Screen v//;"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fastqscreen | FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect. | https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:16:56 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffastqscreen%2Fbuildfromindex/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fastqscreen/buildfromindex/blobs/sha256:28c824ef7d29ded194f377647bf340f19e61b64d66526733edc1bfa02ce9722e |
| Size | 3.2 KB |
| Checksum | sha256:28c824ef7d29ded194f377647bf340f19e61b64d66526733edc1bfa02ce9722e |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:16:56 (UTC) | 3 | 3.2 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:01:00 (UTC) | 3 | 3.2 KB | |
| 0.0.0-02a6b4c | 13 Apr 2026 15:00:29 (UTC) | 3 | 3.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:59:42 (UTC) | 4 | 3.2 KB |