Nextflow Modules
Showing module(s) with keyword "build"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bowtie2/build | Process | build index fasta genome reference | Builds bowtie index for reference genome |
| nf-core/bracken/build | Process | kraken2 bracken database build | Extends a Kraken2 database to be compatible with Bracken |
| nf-core/catpack/prepare | Process | catpack cat prepare database profiling build | Creates a CAT_pack database based on input FASTAs |
| nf-core/centrifuge/build | Process | database metagenomics build db fasta | Build centrifuge database for taxonomic profiling |
| nf-core/fasta_build_add_kraken2 | Workflow | metagenomics kraken2 database build custom | KRAKEN2 build custom database subworkflow |
| nf-core/fasta_build_add_kraken2_bracken | Workflow | metagenomics kraken2 database build custom bracken | KRAKEN2 and BRACKEN build custom database subworkflow |
| nf-core/fastqscreen/buildfromindex | Process | build index genome reference | Build fastq screen config file from bowtie index files |
| nf-core/hisat2/build | Process | build index fasta genome reference | Builds HISAT2 index for reference genome |
| nf-core/hisat3n/build | Process | build index fasta genome reference bisulfite methylation | Build HISAT-3N index for nucleotide conversion sequencing alignment |
| nf-core/kraken2/add | Process | metagenomics db classification build kraken2 add | Adds fasta files to a Kraken2 taxonomic database |
| nf-core/kraken2/build | Process | metagenomics db classification build kraken2 | Builds Kraken2 database |
| nf-core/kraken2/buildstandard | Process | metagenomics db classification build kraken2 standard download | Downloads and builds Kraken2 standard database |
| nf-core/krakenuniq/build | Process | metagenomics krakenuniq database build ncbi | Download and build (custom) KrakenUniq databases |
| nf-core/metacache/build | Process | genomics metagenomics taxonomy short reads long reads kmer k-mer metacache build reference | Taxonomic profiling database building with MetaCache |
| nf-core/starfusion/build | Process | download starfusion build | Download STAR-fusion genome resource required to run STAR-Fusion caller |
| nf-core/svdb/build | Process | structural variants build svdb | Build a structural variant database |
| nf-core/yara/index | Process | build index fasta genom |