|
nf-core/bowtie2/build
|
build
index
fasta
genome
reference
|
Builds bowtie index for reference genome
|
|
nf-core/bracken/build
|
kraken2
bracken
database
build
|
Extends a Kraken2 database to be compatible with Bracken
|
|
nf-core/catpack/prepare
|
catpack
cat
prepare
database
profiling
build
|
Creates a CAT_pack database based on input FASTAs
|
|
nf-core/centrifuge/build
|
database
metagenomics
build
db
fasta
|
Build centrifuge database for taxonomic profiling
|
|
nf-core/fastqscreen/buildfromindex
|
build
index
genome
reference
|
Build fastq screen config file from bowtie index files
|
|
nf-core/hisat2/build
|
build
index
fasta
genome
reference
|
Builds HISAT2 index for reference genome
|
|
nf-core/hisat3n/build
|
build
index
fasta
genome
reference
bisulfite
methylation
|
Build HISAT-3N index for nucleotide conversion sequencing alignment
|
|
nf-core/kraken2/add
|
metagenomics
db
classification
build
kraken2
add
|
Adds fasta files to a Kraken2 taxonomic database
|
|
nf-core/kraken2/build
|
metagenomics
db
classification
build
kraken2
|
Builds Kraken2 database
|
|
nf-core/kraken2/buildstandard
|
metagenomics
db
classification
build
kraken2
standard
download
|
Downloads and builds Kraken2 standard database
|
|
nf-core/krakenuniq/build
|
metagenomics
krakenuniq
database
build
ncbi
|
Download and build (custom) KrakenUniq databases
|
|
nf-core/metacache/build
|
genomics
metagenomics
taxonomy
short reads
long reads
kmer
k-mer
metacache
build
reference
|
Taxonomic profiling database building with MetaCache
|
|
nf-core/starfusion/build
|
download
starfusion
build
|
Download STAR-fusion genome resource required to run STAR-Fusion caller
|
|
nf-core/svdb/build
|
structural variants
build
svdb
|
Build a structural variant database
|
|
nf-core/yara/index
|
build
index
fasta
genome
reference
|
Builds a YARA index for a reference genome
|