nf-core/fasttree @ 0.0.0-6c4ed3a
Summary
Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments.
Get started
Add the following snippet to your workflow script to include this module.
include { FASTTREE } from 'nf-core/fasttree'
License
MIT License
Process
Name
|
FASTTREE |
|---|
Input
1 channel
alignment
file
|
A FASTA format multiple sequence alignment file *.{fasta,fas,fa,mfa}
|
|---|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
phylogeny
*.tre
file
|
A phylogeny in Newick format *.{tre}
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| fasttree | FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences | http://www.microbesonline.org/fasttree/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:17:00 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffasttree/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fasttree/blobs/sha256:3a0eaa7729b73be5b88532267567b576ba848e7254d3a14b64ede380e1d4d03b |
| Size | 2.0 KB |
| Checksum | sha256:3a0eaa7729b73be5b88532267567b576ba848e7254d3a14b64ede380e1d4d03b |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:00 (UTC) | 3 | 2.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:12:02 (UTC) | 4 | 2.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:00:36 (UTC) | 3 | 1.9 KB |