nf-core/fgbio/callduplexconsensusreads @ 0.0.0-0c7146d
Summary
Uses FGBIO CallDuplexConsensusReads to call duplex consensus sequences from reads generated from the same double-stranded source molecule.
Get started
Add the following snippet to your workflow script to include this module.
include { FGBIO_CALLDUPLEXCONSENSUSREADS } from 'nf-core/fgbio/callduplexconsensusreads'
License
MIT License
Process
Name
|
FGBIO_CALLDUPLEXCONSENSUSREADS |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
grouped_bam
file
|
Grouped BAM file *.bam
|
min_reads
string
|
Minimum number of raw/original reads to build each consensus read. Can be a space delimited list of 1-3 values. See fgbio documentation for more details. |
|---|
min_baseq
integer
|
Ignore bases in raw reads that have Q below this value |
|---|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.bam
file
|
consensus BAM file ${prefix}.bam
|
#2
versions_fgbio
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
fgbio
string
|
The tool name |
fgbio --version 2>&1 | tr -d "[:cntrl:]" | sed -e "s/^.*Version: //;s/\[.*$//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fgbio | A set of tools for working with genomic and high throughput sequencing data, including UMIs | http://fulcrumgenomics.github.io/fgbio/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:00:51 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffgbio%2Fcallduplexconsensusreads/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fgbio/callduplexconsensusreads/blobs/sha256:310de13985e290ee4c3010c5ad5a1f823f5037ba0f0a9fb0d019939f142df433 |
| Size | 2.9 KB |
| Checksum | sha256:310de13985e290ee4c3010c5ad5a1f823f5037ba0f0a9fb0d019939f142df433 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:10 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:00:51 (UTC) | 3 | 2.9 KB |