nf-core/fgbio/zipperbams @ 0.0.0-6c4ed3a
Summary
FGBIO tool to zip together an unmapped and mapped BAM to transfer metadata into the output BAM
Get started
Add the following snippet to your workflow script to include this module.
include { FGBIO_ZIPPERBAMS } from 'nf-core/fgbio/zipperbams'
License
MIT License
Process
Name
|
FGBIO_ZIPPERBAMS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
mapped_bam
file
|
mapped BAM/SAM file *.{bam,sam}
|
unmapped_bam
file
|
unmapped BAM file *.bam
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'GRCh38' ] |
|---|---|
fasta
file
|
fasta file containing genomic sequence information *.{fasta,fna,fa}
|
index
file
|
fasta index file *.fai
|
dict
file
|
dict file containing a sequence dictionary for the fasta file *.dict
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.bam
file
|
Zipped BAM file *.bam
|
#2
versions_fgbio
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
fgbio
string
|
The tool name |
fgbio --version 2>&1 | tr -d "[:cntrl:]" | sed -e "s/^.*Version: //;s/\[.*$//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fgbio | A set of tools for working with genomic and high throughput sequencing data, including UMIs | http://fulcrumgenomics.github.io/fgbio/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:17:21 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffgbio%2Fzipperbams/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fgbio/zipperbams/blobs/sha256:737f86068d6f8256985f8e56de3b8042d3cbe3e848365953e2ce00e03e830a89 |
| Size | 3.0 KB |
| Checksum | sha256:737f86068d6f8256985f8e56de3b8042d3cbe3e848365953e2ce00e03e830a89 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:21 (UTC) | 4 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:01:06 (UTC) | 3 | 3.0 KB |