Nextflow Registry | nf-core/fibertoolsrs/extract@0.0.0-3fc6d40

nf-core/fibertoolsrs/extract @ 0.0.0-3fc6d40

Extract Fiber-seq information (such as m6A, CpG, nucleosomes, and MSPs) from BAM file into BED file

methylation genomics bam m6A fiberseq

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @YiJin-Xiong

Maintainers: @YiJin-Xiong

Extract Fiber-seq information (such as m6A, CpG, nucleosomes, and MSPs) from BAM file into BED file

Add the following snippet to your workflow script to include this module.

include { FIBERTOOLSRS_EXTRACT } from 'nf-core/fibertoolsrs/extract'

MIT License

Process

`Name`	`FIBERTOOLSRS_EXTRACT`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`bam` file	Sorted BAM/CRAM file `*.{bam,cram}`

`extract_type` string	Type of fiberseq information to extract e.g. `m6a`, `cpg`, `msp`, `nuc`, `all`

Output 2 channels

#1 bed tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.bed.gz` file	Gzipped BED file with fiber-seq information `*.bed.gz`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
fibertoolsrs	Mitchell Vollger's rust tools for fiberseq data.	https://fiberseq.github.io/fibertools/fibertools.html

Version	0.0.0-3fc6d40
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	22 Apr 2026 15:12:11 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Ffibertoolsrs%2Fextract/0.0.0-3fc6d40/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fibertoolsrs/extract/blobs/sha256:3e0182607a8a0d34280e5c837a6983fe7e19c8041b96ec2f14f3ee416d4f002b
Size	2.6 KB
Checksum	sha256:3e0182607a8a0d34280e5c837a6983fe7e19c8041b96ec2f14f3ee416d4f002b
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:17:23 (UTC)	3	2.6 KB
0.0.0-3fc6d40	22 Apr 2026 15:12:11 (UTC)	3	2.6 KB
0.0.0-0c7146d	08 Apr 2026 19:01:09 (UTC)	3	2.6 KB