nf-core/fibertoolsrs/predictm6a @ 0.0.0-0c7146d
Summary
Predict m6A positions using HiFi kinetics data and encode the results in the MM and ML bam tags. Also adds nucleosome (nl, ns) and MTase sensitive patches (al, as)
Get started
Add the following snippet to your workflow script to include this module.
include { FIBERTOOLSRS_PREDICTM6A } from 'nf-core/fibertoolsrs/predictm6a'
License
MIT License
Process
Name
|
FIBERTOOLSRS_PREDICTM6A |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
Sorted BAM/CRAM file *.{bam,cram}
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.bam
file
|
bam file with m6A calls in new/extended MM and ML bam tags *.bam
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| fibertoolsrs | Mitchell Vollger's rust tools for fiberseq data. | https://fiberseq.github.io/fibertools/fibertools.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:01:11 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffibertoolsrs%2Fpredictm6a/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fibertoolsrs/predictm6a/blobs/sha256:7119a54e505a3275f0730a49ff21382c00cbdd8263e979c1d5664fe2a792d80a |
| Size | 2.4 KB |
| Checksum | sha256:7119a54e505a3275f0730a49ff21382c00cbdd8263e979c1d5664fe2a792d80a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:25 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:12:12 (UTC) | 2 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:01:11 (UTC) | 3 | 2.4 KB |