nf-core/foldseek/createdb @ 0.0.0-3fc6d40
Summary
Create a database from protein structures
Get started
Add the following snippet to your workflow script to include this module.
include { FOLDSEEK_CREATEDB } from 'nf-core/foldseek/createdb'
License
MIT License
Process
Name
|
FOLDSEEK_CREATEDB |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
pdb
file
|
Protein structure(s) in PDB, mmCIF or mmJSON format (also works with folder input) *.{pdb,mmcif,mmjson}
|
Output
2 channels
#1
db
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${meta.id}
directory
|
Directory containing pdb database files *
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| foldseek | Foldseek: fast and accurate protein structure search | https://search.foldseek.com/search |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:12:19 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffoldseek%2Fcreatedb/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/foldseek/createdb/blobs/sha256:eabd3ed027220ec159997a4ecf339a3dfe95bdcb52c2cbcbb9b63e4b03b06575 |
| Size | 2.6 KB |
| Checksum | sha256:eabd3ed027220ec159997a4ecf339a3dfe95bdcb52c2cbcbb9b63e4b03b06575 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:39 (UTC) | 4 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:12:19 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:01:31 (UTC) | 2 | 2.6 KB |