nf-core/fq/subsample @ 0.0.0-3fc6d40
Summary
fq subsample outputs a subset of records from single or paired FASTQ files. This requires a seed (--seed) to be set in ext.args.
Get started
Add the following snippet to your workflow script to include this module.
include { FQ_SUBSAMPLE } from 'nf-core/fq/subsample'
License
MIT License
Process
Name
|
FQ_SUBSAMPLE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fastq
file
|
FASTQ file *.{fq,fastq}{,.gz}
|
Output
2 channels
#1
fastq
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
Randomly sampled FASTQ files. *_R[12].fastq.gz
|
#2
versions_fq
tuple
${task.process}
string
|
The name of the process |
|---|---|
fq
string
|
The name of the tool |
fq subsample --version | sed 's/fq-subsample //; s/ .*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fq | fq is a library to generate and validate FASTQ file pairs. | https://github.com/stjude-rust-labs/fq |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:12:27 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffq%2Fsubsample/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fq/subsample/blobs/sha256:3751bae82b9d63948fabf23a869b2f217fe0f0163db1ec19a6a1c1f177523cb4 |
| Size | 3.3 KB |
| Checksum | sha256:3751bae82b9d63948fabf23a869b2f217fe0f0163db1ec19a6a1c1f177523cb4 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:44 (UTC) | 4 | 3.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:12:27 (UTC) | 3 | 3.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:01:41 (UTC) | 3 | 3.2 KB |