Nextflow Modules
Showing module(s) with keyword "subsample"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bam_subsampledepth_samtools | Workflow | subsample bam sam cram | Subsample a BAM/CRAM/SAM file using samtools to a given mean depth. "region", "subsample_fraction", "mean_depth" and "depth" keys will be added to the meta map to distinguish the different file generated and therefore shouldn't be used. The `depth` key will be added to the meta map of the output channel. |
| nf-core/fastq_qc_trim_filter_setstrandedness | Workflow | fastq rnaseq rrna trimming subsample strandedness | Performs linting, quality control, trimming, filtering, and strandedness determination on RNA-seq FASTQ files, preparing them for downstream analysis. |
| nf-core/fastq_subsample_fq_salmon | Workflow | fastq subsample strandedness | Subsample fastq |
| nf-core/fgumi/downsample | Process | UMIs downsample bam subsample | Downsample a BAM by UMI family using streaming with fgumi |
| nf-core/fq/subsample | Process | fastq fq subsample | fq subsample outputs a subset of records from single or paired FASTQ files. This requires a seed (--seed) to be set in ext.args. |
| nf-core/trycycler/subsample | Process | subsample fastq genomics | Subsample a long-read sequencing fastq file for multiple assemblies |
| nf-core/variantbam | Process | filter bam subsample downsample downsample bam subsample bam | Filtering, downsampling and profiling alignments in BAM/CRAM formats |