Nextflow Registry | nf-core/gappa/examineheattree@0.0.0-6c4ed3a

nf-core/gappa/examineheattree @ 0.0.0-6c4ed3a

colours a phylogeny with placement densities

phylogeny phylogenetic placement heattree visualisation

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @erikrikarddaniel

Maintainers: @erikrikarddaniel

colours a phylogeny with placement densities

Add the following snippet to your workflow script to include this module.

include { GAPPA_EXAMINEHEATTREE } from 'nf-core/gappa/examineheattree'

MIT License

Process

`Name`	`GAPPA_EXAMINEHEATTREE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`jplace` file	jplace file output from phylogenetic placement, e.g. EPA-NG, gzipped or not `*.{jplace,jplace.gz}`

Output 7 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.log` file	log file from the run `*.log`

#2 svg tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.svg` file	coloured phylogenetic tree file in svg format `*.svg`

#3 nexus tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.nexus` file	coloured phylogenetic tree file in nexus format `*.nexus`

#4 newick tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.newick` file	phylogenetic tree file in newick format `*.newick`

#5 colours tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.colours.txt` file	colours used in plot `*.colours.txt`

#6 phyloxml tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`*.phyloxml` file	coloured phylogenetic tree file in phyloxml format `*.phyloxml`

#7 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
gappa	Genesis Applications for Phylogenetic Placement Analysis	https://github.com/lczech/gappa

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:18:11 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fgappa%2Fexamineheattree/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gappa/examineheattree/blobs/sha256:8a159605df54c9eef5c11f1edd0297f663754c60d23e980f8e08825fbfe12b26
Size	3.0 KB
Checksum	sha256:8a159605df54c9eef5c11f1edd0297f663754c60d23e980f8e08825fbfe12b26
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:18:11 (UTC)	3	3.0 KB
0.0.0-3fc6d40	22 Apr 2026 15:12:50 (UTC)	3	3.0 KB
0.0.0-0c7146d