nf-core/gatk4/gatherpileupsummaries @ 0.0.0-6c4ed3a
Summary
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Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_GATHERPILEUPSUMMARIES } from 'nf-core/gatk4/gatherpileupsummaries'
License
MIT License
Process
Name
|
GATK4_GATHERPILEUPSUMMARIES |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
pileup
file
|
Pileup files from gatk4/getpileupsummaries *.pileups.table
|
dict
file
|
dictionary |
|---|
Output
2 channels
#1
table
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pileups.table
file
|
pileup summaries table file *.pileups.table
|
#2
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Genome Analysis Toolkit (GATK4) | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:18:52 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fgatherpileupsummaries/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gatk4/gatherpileupsummaries/blobs/sha256:9e67d890cf7a05ded69e43ad656c4e7b4d70cbebe2d803ca897545df56045ff2 |
| Size | 2.7 KB |
| Checksum | sha256:9e67d890cf7a05ded69e43ad656c4e7b4d70cbebe2d803ca897545df56045ff2 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:18:52 (UTC) | 4 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:03:16 (UTC) | 3 | 2.7 KB |