Nextflow Modules
Showing module(s) with keyword "mpileup"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bcftools/mpileup | variant calling mpileup VCF | Compresses VCF files |
| nf-core/gatk4/gatherpileupsummaries | gatk4 mpileup sort | write your description here |
| nf-core/poolsnp | poolseq mpileup variant-calling | PoolSNP is a heuristic SNP caller, which uses an MPILEUP file and a reference genome in FASTA format as inputs. |
| nf-core/samtools/mpileup | mpileup bam sam cram | Generate text pileup output for one or multiple BAM files. Each input file produces a separate group of pileup columns in the output. |
| nf-core/sequencetools/pileupcaller | genotyping mpileup random draw pseudohaploid pseudodiploid freqsum plink bed eigenstrat | PileupCaller is a tool to create genotype calls from bam files using read-sampling methods |