nf-core/gatk4/splitintervals @ 0.0.0-6c4ed3a
Summary
Split intervals into sub-interval files.
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_SPLITINTERVALS } from 'nf-core/gatk4/splitintervals'
License
MIT License
Process
Name
|
GATK4_SPLITINTERVALS |
|---|
Input
4 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
intervals
file
|
Interval file |
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
fasta
file
|
Reference FASTA *.{fa,fasta}
|
#3
tuple
meta3
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
fai
file
|
Reference FASTA index *.fai
|
#4
tuple
meta4
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
dict
file
|
Reference sequence dictionary *.dict
|
Output
2 channels
#1
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
#2
split_intervals
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] *.interval_list
|
|---|---|
**.interval_list
map
|
Groovy Map containing sample information e.g. [ id:'test' ] *.interval_list
|
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Genome Analysis Toolkit (GATK4) | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:20:35 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fsplitintervals/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gatk4/splitintervals/blobs/sha256:dc523f0be620b6d677377c9a2c20234bc5cff0e38eb63a945e62bc17118622d5 |
| Size | 2.9 KB |
| Checksum | sha256:dc523f0be620b6d677377c9a2c20234bc5cff0e38eb63a945e62bc17118622d5 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:20:35 (UTC) | 4 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:04:50 (UTC) | 4 | 2.9 KB |