nf-core/gcta/makegrm @ 0.0.0-9ed7f15
Summary
Compute a whole dense GRM with GCTA
Get started
Add the following snippet to your workflow script to include this module.
include { GCTA_MAKEGRM } from 'nf-core/gcta/makegrm'
License
MIT License
Process
Name
|
GCTA_MAKEGRM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing GRM sample metadata e.g. |
|---|---|
mfile
file
|
GCTA multi-input manifest consumed by *.{mbfile,mpfile,txt}
|
bed_pgen
file
|
Collection of PLINK primary genotype files referenced by the multi-input manifest *.{bed,pgen}
|
bim_pvar
file
|
Collection of PLINK variant metadata files referenced by the multi-input manifest *.{bim,pvar}
|
fam_psam
file
|
Collection of PLINK sample metadata files referenced by the multi-input manifest *.{fam,psam}
|
Output
2 channels
#1
grm_files
tuple
meta
map
|
Groovy Map containing GRM sample metadata e.g. |
|---|---|
*.grm.*
file
|
Dense GRM sidecar files *.grm.{id,bin,N.bin}
|
#2
versions_gcta
tuple
${task.process}
string
|
The process the version was collected from |
|---|---|
gcta
string
|
The tool name |
gcta --version | sed -En 's/^[*] version v([0-9.]*).*/\1/p'
eval
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gcta | GCTA is a tool for genome-wide complex trait analysis. | https://yanglab.westlake.edu.cn/software/gcta/ |
| Version | 0.0.0-9ed7f15 |
|---|---|
| Commit ID | 76dfaba27ac4eacd80cdac5ba28985ee2646b0bd |
| Release Date | 22 May 2026 15:00:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgcta%2Fmakegrm/0.0.0-9ed7f15/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gcta/makegrm/blobs/sha256:18411ca2102d2ab752ce854646d1acfcb17b569bfeb211df8d10f592b3bab53c |
| Size | 3.1 KB |
| Checksum | sha256:18411ca2102d2ab752ce854646d1acfcb17b569bfeb211df8d10f592b3bab53c |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-76dfaba | 27 May 2026 15:00:36 (UTC) | 0 | 2.9 KB | ↔ | |
| 0.0.0-9ed7f15 | 22 May 2026 15:00:23 (UTC) | 0 | 3.1 KB | - |