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nf-core/gcta/addgrms
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gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
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Combine multiple GRMs listed in an MGRM manifest into a single dense GRM
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nf-core/gcta/bivariatereml
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gcta
genome-wide complex trait analysis
reml
restricted maximum likelihood
bivariate
grm
genetic relationship matrix
genetics
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Run bivariate REML analysis with a single dense GRM
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nf-core/gcta/bivariateremlldms
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gcta
genome-wide complex trait analysis
reml
restricted maximum likelihood
bivariate
ldms
linkage disequilibrium and minor allele frequency stratification
grm
genetic relationship matrix
genetics
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Run bivariate REML-LDMS analysis with an MGRM manifest
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nf-core/gcta/grmcutoff
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gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
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Apply a genetic relationship cutoff to a dense GRM using `gcta --grm-cutoff`
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nf-core/gcta/keep
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gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
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Apply a keep file to a dense GRM using `gcta --keep`
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nf-core/gcta/makegrm
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gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
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Compute a whole dense GRM with GCTA
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nf-core/gcta/makegrmpart
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gcta
genome-wide complex trait analysis
grm
genetic relationship matrix
genetics
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Compute one partition of a GCTA genetic relationship matrix
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nf-core/gcta/reml
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gcta
genome-wide complex trait analysis
reml
restricted maximum likelihood
grm
genetic relationship matrix
genetics
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Run univariate REML heritability estimation with a dense GRM
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nf-core/gcta/remlldms
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gcta
genome-wide complex trait analysis
reml
restricted maximum likelihood
ldms
linkage disequilibrium and minor allele frequency stratification
grm
genetic relationship matrix
genetics
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Run REML-LDMS heritability estimation with an MGRM manifest
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nf-core/plink/genome
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plink
identity-by-descent
genetics
genome
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Calculates identity-by-descent over autosomal SNPs
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nf-core/plink/ld
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genetics
associations
variants
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LD analysis in PLINK examines genetic variant associations within populations
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