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Showing module(s) with keyword "genetics"

Module Kind Keywords Description
nf-core/gcta/addgrms Process gcta genome-wide complex trait analysis grm genetic relationship matrix genetics Combine multiple GRMs listed in an MGRM manifest into a single dense GRM
nf-core/gcta/adjustgrm Process gcta genome-wide complex trait analysis grm genetic relationship matrix genetics Adjust a dense GRM for incomplete tagging using `gcta --grm-adj`
nf-core/gcta/bivariatereml Process gcta genome-wide complex trait analysis reml restricted maximum likelihood bivariate grm genetic relationship matrix genetics Run bivariate REML analysis with a single dense GRM
nf-core/gcta/bivariateremlldms Process gcta genome-wide complex trait analysis reml restricted maximum likelihood bivariate ldms linkage disequilibrium and minor allele frequency stratification grm genetic relationship matrix genetics Run bivariate REML-LDMS analysis with an MGRM manifest
nf-core/gcta/calculateldscores Process gcta genome-wide complex trait analysis ld score linkage disequilibrium score ldms linkage disequilibrium and minor allele frequency stratification genetics Calculate LD scores with GCTA and derive GREML-LDMS SNP groups
nf-core/gcta/fastgwa Process gcta genome-wide complex trait analysis fastgwa fast genome-wide association gwas genome-wide association study genetics Run GCTA fastGWA mixed linear model association analysis with PLINK genotype inputs
nf-core/gcta/grmcutoff Process gcta genome-wide complex trait analysis grm genetic relationship matrix genetics Apply a genetic relationship cutoff to a dense GRM using `gcta --grm-cutoff`
nf-core/gcta/keep Process gcta genome-wide complex trait analysis grm genetic relationship matrix genetics Apply a keep file to a dense GRM using `gcta --keep`
nf-core/gcta/makebksparse Process gcta genome-wide complex trait analysis grm genetic relationship matrix sparse genetics Create a sparse GRM from a dense GRM for downstream fastGWA analyses
nf-core/gcta/makegrm Process gcta genome-wide complex trait analysis grm genetic relationship matrix genetics Compute a whole dense GRM with GCTA
nf-core/gcta/makegrmpart Process gcta genome-wide complex trait analysis grm genetic relationship matrix genetics Compute one partition of a GCTA genetic relationship matrix
nf-core/gcta/reml Process gcta genome-wide complex trait analysis reml restricted maximum likelihood grm genetic relationship matrix genetics Run univariate REML heritability estimation with a dense GRM
nf-core/gcta/remlldms Process gcta genome-wide complex trait analysis reml restricted maximum likelihood ldms linkage disequilibrium and minor allele frequency stratification grm genetic relationship matrix genetics