Nextflow Registry | nf-core/gcta/makegrmpart@0.0.0-ff147c3

nf-core/gcta/makegrmpart @ 0.0.0-ff147c3

Compute one partition of a GCTA genetic relationship matrix

Latest version: 0.0.0-ff147c3

Total downloads: 1

Source: nf-core/modules

Authors: @lyh970817

Maintainers: @lyh970817

Compute one partition of a GCTA genetic relationship matrix

Add the following snippet to your workflow script to include this module.

include { GCTA_MAKEGRMPART } from 'nf-core/gcta/makegrmpart'

MIT License

Process

`Name`	`GCTA_MAKEGRMPART`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing GRM-partition sample metadata e.g. `[ id:'gcta_grm' ]`
`nparts_gcta` integer	Total number of GRM partitions requested via `--make-grm-part`; defaults to `1` when `null`
`part_gcta_job` integer	One-based index of the GRM partition to compute via `--make-grm-part`; defaults to `1` when `null`
`mfile` file	GCTA multi-input manifest consumed by `--mbfile` or `--mpfile` `*.{mbfile,mpfile,txt}`
`bed_pgen` file	Collection of PLINK primary genotype files referenced by the multi-input manifest `*.{bed,pgen}`
`bim_pvar` file	Collection of PLINK variant metadata files referenced by the multi-input manifest `*.{bim,pvar}`
`fam_psam` file	Collection of PLINK sample metadata files referenced by the multi-input manifest `*.{fam,psam}`

#2 tuple

`meta2` map	Groovy Map containing SNP-selection metadata e.g. `[ id:'snp_group1' ]`
`snp_group_file` file	Optional SNP extraction file passed to `--extract`; provide `[]` when absent `*.{txt,list}`

Output 2 channels

#1 grm_files tuple

`meta` map	Groovy Map containing GRM-partition sample metadata e.g. `[ id:'gcta_grm' ]`
`.part_${nparts}_${part}.grm.` file	Partitioned GRM output files, including ID, binary matrix, and sample-count matrix files `.part_${nparts}_${part}.grm.`
`nparts_gcta` integer	Total number of GRM partitions requested via `--make-grm-part`
`part_gcta_job` integer	One-based index of the GRM partition computed via `--make-grm-part`

#2 versions_gcta tuple

`${task.process}` string	The process the versions were collected from
`gcta` string	The tool name
`gcta --version \| sed -En 's/^[] version v([0-9.]).*/\1/p'` eval	The command used to generate the version of the tool

Tool	Description	Homepage
gcta	GCTA is a tool for genome-wide complex trait analysis.	https://yanglab.westlake.edu.cn/software/gcta/

Version	0.0.0-ff147c3
Commit ID	ff147c37ffff4b7d1a446acee2ec3daead3af97f
Release Date	14 May 2026 15:00:19 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fgcta%2Fmakegrmpart/0.0.0-ff147c3/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gcta/makegrmpart/blobs/sha256:010232890c887cae6136c82839c46e458bba038eaf8d07af5925e471cff058fb
Size	3.8 KB
Checksum	sha256:010232890c887cae6136c82839c46e458bba038eaf8d07af5925e471cff058fb
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-ff147c3	14 May 2026 15:00:19 (UTC)		1	3.8 KB	-