nf-core/gem3/gem3indexer @ 0.0.0-0c7146d
Summary
Create a GEM index from a FASTA file
Get started
Add the following snippet to your workflow script to include this module.
include { GEM3_GEM3INDEXER } from 'nf-core/gem3/gem3indexer'
License
MIT License
Process
Name
|
GEM3_GEM3INDEXER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing information about the fasta file e.g. [ id:'test' ] |
|---|---|
fasta
file
|
A reference FASTA file to index *.{fasta,fa,fna}
|
Output
3 channels
#1
info
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.info
file
|
The execution log *.info
|
#2
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gem
file
|
The GEM index file *.gem
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gem3 | The GEM indexer (v3). | https://github.com/miqalvarez/gem3/tree/gem3-indexer |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:05:24 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgem3%2Fgem3indexer/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gem3/gem3indexer/blobs/sha256:9a8d5bf6c1628f59f362848287be77708359839fad87d40fd7ba584e0cfa7f7a |
| Size | 2.2 KB |
| Checksum | sha256:9a8d5bf6c1628f59f362848287be77708359839fad87d40fd7ba584e0cfa7f7a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:20:57 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:13:41 (UTC) | 3 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:05:24 (UTC) | 3 | 2.2 KB |