Nextflow Modules
Showing module(s) with keyword "mappability"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/gem2/gem2bedmappability | Process | mappability bedgraph index gem | Convert a mappability file to bedgraph format |
| nf-core/gem2/gemindexer | Process | fasta index reference mappability | Create a GEM index from a FASTA file |
| nf-core/gem2/gemmappability | Process | mappability gem index reference | Define the mappability of a reference |
| nf-core/gem3/gem3indexer | Process | fastq genomics mappability | Create a GEM index from a FASTA file |
| nf-core/gem3/gem3mapper | Process | fastq genomics mappability | Performs fastq alignment to a fasta reference using using gem3-mapper |
| nf-core/genmap/index | Process | index mappability fasta | create index file for genmap |
| nf-core/genmap/map | Process | mappability index fasta bedgraph csv wig | create mappability files for a genome |
| nf-core/hmmcopy/generatemap | Process | hmmcopy mapcounter mappability | Perl script (generateMap.pl) generates the mappability of a genome given a certain size of reads, for input to hmmcopy mapcounter. Takes a very long time on large genomes, is not parallelised at all. |