Nextflow Registry | nf-core/genescopefk@0.0.0-0c7146d

nf-core/genescopefk @ 0.0.0-0c7146d

A derivative of GenomeScope2.0 modified to work with FastK

k-mer genome profile histogram

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @mahesh-panchal

Maintainers: @mahesh-panchal

A derivative of GenomeScope2.0 modified to work with FastK

Add the following snippet to your workflow script to include this module.

include { GENESCOPEFK } from 'nf-core/genescopefk'

MIT License

Process

`Name`	`GENESCOPEFK`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fastk_histex_histogram` file	A histogram formatted for GeneScope using the -G parameter from Fastk Histex `*.hist`

Output 9 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_genescopefk.log` file	GeneScopeFK command stdout log `*_genescopefk.log`

#2 model tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_model.txt` file	GeneScope model fit summary `*_model.txt`

#3 summary tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_summary.txt` file	GeneScope histogram summary `*_summary.txt`

#4 kmer_cov tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`KMERCOV` float	Average kmer coverage value extracted from summary file `[0-9.]+`

#5 log_plot tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_log_plot.png` file	A GeneScope log plot in PNG format `*_log_plot.png`

#6 linear_plot tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_linear_plot.png` file	A GeneScope linear plot in PNG format `*_linear_plot.png`

#7 transformed_log_plot tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_transformed_log_plot.png` file	A GeneScope transformed log plot in PNG format `*_transformed_log_plot.png`

#8 versions_genescopefk tuple

`${task.process}` string	Name of the process
`genescopefk` string	Name of the tool
`R --version \| sed '1!d; s/.version //; s/ .//'` string	The expression to obtain the version of the tool

#9 transformed_linear_plot tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_transformed_linear_plot.png` file	A GeneScope transformed linear plot in PNG format `*_transformed_linear_plot.png`

Tool	Description	Homepage
genescopefk	A derivative of GenomeScope2.0 modified to work with FastK	https://github.com/thegenemyers/GENESCOPE.FK

Version	0.0.0-0c7146d
Commit ID	0c7146d85582628b5d1034504702fa808632b1af
Release Date	08 Apr 2026 19:05:30 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fgenescopefk/0.0.0-0c7146d/download