Nextflow Modules
Showing module(s) with keyword "k-mer"
| Module | Keywords | Description |
|---|---|---|
| nf-core/fastk/fastk | k-mer count histogram | A fast K-mer counter for high-fidelity shotgun datasets |
| nf-core/fastk/histex | k-mer histogram fastk | A fast K-mer counter for high-fidelity shotgun datasets |
| nf-core/fastk/merge | merge k-mer histogram fastk | A tool to merge FastK histograms |
| nf-core/ganon/buildcustom | ganon metagenomics profiling taxonomy k-mer database | Build ganon database using custom reference sequences. |
| nf-core/ganon/classify | ganon metagenomics profiling taxonomy k-mer classification classify | Classify FASTQ files against ganon database |
| nf-core/ganon/report | ganon metagenomics profiling taxonomy k-mer classification report | Generate a ganon report file from the output of ganon classify |
| nf-core/ganon/table | ganon metagenomics profiling taxonomy k-mer classification report table | Generate a multi-sample report file from the output of ganon report runs |
| nf-core/genescopefk | k-mer genome profile histogram | A derivative of GenomeScope2.0 modified to work with FastK |
| nf-core/jellyfish/count | k-mer DNA substrings | Efficiently counts k-mers from DNA sequencing reads using a fast, memory-efficient, parallelized algorithm |
| nf-core/jellyfish/dump | k-mer DNA substrings | Dumps the results from a jellyfish binary file into a human readable format |
| nf-core/kat/hist | k-mer histogram count | Creates a histogram of the number of distinct k-mers having a given frequency. |
| nf-core/khmer/trimlowabund | quality control genomics filtering reads khmer k-mer | Removes low abundance k-mers from FASTA/FASTQ files |
| nf-core/khmer/uniquekmers | khmer k-mer effective genome size | In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more |
| nf-core/kmergenie | k-mer count genome assembly | KmerGenie estimates the best k-mer length for genome de novo assembly |
| nf-core/merquryfk/katcomp | fastk k-mer compare | A reimplemenation of Kat Comp to work with FastK databases |
| nf-core/merqury/merqury | k-mer assembly evaluation | k-mer based assembly evaluation. |
| nf-core/meryl/count | k-mer count reference-free | A genomic k-mer counter (and sequence utility) with nice features. |
| nf-core/meryl/histogram | k-mer histogram reference-free | A genomic k-mer counter (and sequence utility) with nice features. |
| nf-core/meryl/unionsum | k-mer unionsum reference-free | A genomic k-mer counter (and sequence utility) with nice features. |
| nf-core/metacache/build | genomics metagenomics taxonomy short reads long reads kmer k-mer metacache build reference | Taxonomic profiling database building with MetaCache |