Nextflow Registry | nf-core/getorganelle/config@0.0.0-6c4ed3a

nf-core/getorganelle/config @ 0.0.0-6c4ed3a

Downloads databases needed for running getorganelle

assembly organelle mitochondria download database

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @erinyoung

Downloads databases needed for running getorganelle

Add the following snippet to your workflow script to include this module.

include { GETORGANELLE_CONFIG } from 'nf-core/getorganelle/config'

MIT License

Process

`Name`	`GETORGANELLE_CONFIG`

Input 1 channel

`organelle_type` string	Type of database, esp. embplant_pt (embryophyta plant plastome), other_pt (non-embryophyta plant plastome), embplant_mt (plant mitochondrion), embplant_nr (plant nuclear ribosomal RNA), animal_mt (animal mitochondrion), and fungus_mt (fungus mitochondrion), fungus_nr (fungus nuclear ribosomal RNA)

Output 2 channels

#1 db tuple

`organelle_type` string	Type of database, esp. embplant_pt (embryophyta plant plastome), other_pt (non-embryophyta plant plastome), embplant_mt (plant mitochondrion), embplant_nr (plant nuclear ribosomal RNA), animal_mt (animal mitochondrion), and fungus_mt (fungus mitochondrion), fungus_nr (fungus nuclear ribosomal RNA)
`getorganelle` directory	Downloaded database for GetOrganelle

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
getorganelle	Get organelle genomes from genome skimming data	https://github.com/Kinggerm/GetOrganelle

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:21:18 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fgetorganelle%2Fconfig/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/getorganelle/config/blobs/sha256:4cdc9f19274dcb9662124b92f6ac61a3eaac4572d24fc15333bf13e3b78a6ec0
Size	2.8 KB
Checksum	sha256:4cdc9f19274dcb9662124b92f6ac61a3eaac4572d24fc15333bf13e3b78a6ec0
Downloads	4

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:21:18 (UTC)	4	2.8 KB
0.0.0-3fc6d40	22 Apr 2026 15:13:52 (UTC)	3	2.9 KB
0.0.0-0c7146d	08 Apr 2026 19:05:57 (UTC)	2	2.8 KB