Nextflow Modules
Showing module(s) with keyword "mitochondria"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/eklipse | Process | eklipse mitochondria mtDNA circos deletion SV | tool for detection and quantification of large mtDNA rearrangements. |
| nf-core/gatk4/shiftfasta | Process | gatk4 mitochondria shiftchain shiftfasta shiftintervals | Create a fasta with the bases shifted by offset |
| nf-core/getorganelle/config | Process | assembly organelle mitochondria download database | Downloads databases needed for running getorganelle |
| nf-core/getorganelle/fromreads | Process | assembly organelle mitochondria illumina | Assembles organelle genomes from genomic data |
| nf-core/hmtnote/annotate | Process | hmtnote mitochondria annotation | Human mitochondrial variants annotation using HmtVar. Contains .plk file with annotation, so can be run offline |
| nf-core/mgatk/call | Process | mitochondria mtDNA variants ATAC-seq | Call mitochondrial variants and generate mitochondrial coverage profiles from an indexed BAM file |
| nf-core/mtnucratio | Process | mtnucratio ratio reads bam mitochondrial to nuclear ratio mitochondria statistics | A small Java tool to calculate ratios between MT and nuclear sequencing reads in a given BAM file. |