Nextflow Registry | nf-core/gfatools/gfa2fa@0.0.0-0c7146d

nf-core/gfatools/gfa2fa @ 0.0.0-0c7146d

Converts GFA or rGFA files to FASTA

gfa rgfa fasta assembly genome graph genomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 10

Source: nf-core/modules

Authors: @mahesh-panchal

Maintainers: @mahesh-panchal

Converts GFA or rGFA files to FASTA

Add the following snippet to your workflow script to include this module.

include { GFATOOLS_GFA2FA } from 'nf-core/gfatools/gfa2fa'

MIT License

Process

`Name`	`GFATOOLS_GFA2FA`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`gfa` file	GFA or rGFA file `*.gfa`

Output 2 channels

#1 fasta tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.fasta.gz` file	FASTA file `*.fasta`

#2 versions_gfatools tuple

`${task.process}` string	The name of the process
`gfatools` string	The name of the tool
`gfatools version \| sed '1!d; s/.* //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
gfatools	Tools for manipulating sequence graphs in the GFA and rGFA formats	https://github.com/lh3/gfatools

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 19:06:04 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fgfatools%2Fgfa2fa/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gfatools/gfa2fa/blobs/sha256:7950f835dc2d5929fee832fae01f58540b8a6e8973024701f88add7885f82a73
Size	2.1 KB
Checksum	sha256:7950f835dc2d5929fee832fae01f58540b8a6e8973024701f88add7885f82a73
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:21:23 (UTC)	4	2.1 KB
0.0.0-3fc6d40	22 Apr 2026 15:13:55 (UTC)	3	2.2 KB
0.0.0-0c7146d	08 Apr 2026 19:06:04 (UTC)	3	2.1 KB