nf-core/glimpse/chunk @ 0.0.0-6c4ed3a
Summary
Defines chunks where to run imputation
Get started
Add the following snippet to your workflow script to include this module.
include { GLIMPSE_CHUNK } from 'nf-core/glimpse/chunk'
License
MIT License
Name
|
GLIMPSE_CHUNK |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
Target dataset in VCF/BCF format defined at all variable positions. The file could possibly be without GT field (for efficiency reasons a file containing only the positions is recommended). *.{vcf,bcf,vcf.gz,bcf.gz}
|
input_index
file
|
Index file for the input VCF/BCF file. |
region
string
|
Target region, usually a full chromosome (e.g. chr20:1000000-2000000 or chr20). For chrX, please treat PAR and non-PAR regions as different choromosome in order to avoid mixing ploidy. |
chunk_chr
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Tab delimited output txt file containing buffer and imputation regions. *.txt
|
versions_glimpse
tuple
${task.process}
string
|
The name of the process |
|---|---|
glimpse
string
|
The name of the tool |
GLIMPSE_chunk --help | sed -n '/Version/s/.*: //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| glimpse | GLIMPSE is a phasing and imputation method for large-scale low-coverage sequencing studies. | https://odelaneau.github.io/GLIMPSE |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:21:30 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fglimpse%2Fchunk/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/glimpse/chunk/blobs/sha256:90761b0ce0d814ee2586a3decf8404ddd4a3281868432707287a8829511d3ad7 |
| Size | 2.6 KB |
| Checksum | sha256:90761b0ce0d814ee2586a3decf8404ddd4a3281868432707287a8829511d3ad7 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:21:30 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:14:00 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:06:13 (UTC) | 4 | 2.6 KB |