Nextflow Modules
Showing module(s) with keyword "chunk"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bamtools/split | Process | bamtools bamtools/split bam split chunk | BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. |
| nf-core/bam_vcf_impute_glimpse2 | Workflow | glimpse chunk phase ligate split_reference | Subworkflow to impute VCF and BAM files using GLIMPSE V2 software. The subworkflow takes VCF files, phased reference panel, and genetic maps to perform imputation and outputs phased and imputed VCF files. Meta map of all channels, except ch_input, will be used to perform joint operations. "regionout", "regionoutPadded", "regionSize" keys will be added to the meta map to distinguish the different files before ligation and therefore should not be used. |
| nf-core/elprep/split | Process | bam split by chromosome chunk | Split bam file into manageable chunks |
| nf-core/glimpse2/chunk | Process | chunk low-coverage imputation glimpse | Defines chunks where to run imputation |
| nf-core/glimpse/chunk | Process | chunk imputation low coverage | Defines chunks where to run imputation |
| nf-core/vcf_impute_glimpse | Workflow | glimpse chunk phase ligate | Subworkflow to impute VCF files using GLIMPSE V1 software. The subworkflow takes VCF files, phased reference panel, and genetic maps to perform imputation and outputs phased and imputed VCF files. Meta map of all channels, except ch_input, will be used to perform joint operations. "regionout", "regionoutPadded", "regionSize" keys will be added to the meta map to distinguish the different files before ligation and therefore should not be used. |