nf-core/glimpse2/splitreference @ 0.0.0-0c7146d
Summary
Tool to create a binary reference panel for quick reading time.
Get started
Add the following snippet to your workflow script to include this module.
include { GLIMPSE2_SPLITREFERENCE } from 'nf-core/glimpse2/splitreference'
License
MIT License
Process
Name
|
GLIMPSE2_SPLITREFERENCE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reference
file
|
Reference panel of haplotypes in VCF/BCF format. *.{vcf.gz,bcf.gz}
|
reference_index
file
|
Index file of the Reference panel file. *.{vcf.gz.csi,bcf.gz.csi}
|
input_region
string
|
Target region used for imputation, including left and right buffers (e.g. chr20:1000000-2000000). chrXX:leftBufferPosition-rightBufferPosition
|
output_region
string
|
Target imputed region, excluding left and right buffers (e.g. chr20:1000000-2000000). chrXX:leftBufferPosition-rightBufferPosition
|
map
file
|
File containing the genetic map. *.gmap
|
Output
2 channels
#1
bin_ref
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bin
file
|
binary reference panel *.bin
|
#2
versions_glimpse2
tuple
${task.process}
string
|
The name of the process |
|---|---|
glimpse2
string
|
The name of the tool |
GLIMPSE2_split_reference --help | grep -oE 'v[0-9.]+' | cut -c2-
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| glimpse2 | GLIMPSE2 is a phasing and imputation method for large-scale low-coverage sequencing studies. | https://odelaneau.github.io/GLIMPSE |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:06:30 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fglimpse2%2Fsplitreference/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/glimpse2/splitreference/blobs/sha256:e1694ab480091540f0d10622385c876d7a63ccd331795453a9521cca4d1361f2 |
| Size | 2.9 KB |
| Checksum | sha256:e1694ab480091540f0d10622385c876d7a63ccd331795453a9521cca4d1361f2 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:21:41 (UTC) | 5 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:14:12 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:06:30 (UTC) | 3 | 2.9 KB |